Index

A

add() (Pipeline method) add_column() (Info method) add_mrg_id() (in module slitflow.setreqs) add_param() (Info method) add_splits() (in module slitflow.setreqs) add_user_param() (Info method)

AddColumn (class in slitflow.tbl.convert) addel_param() (Info method) AddGauss (class in slitflow.tbl.math) All (class in slitflow.fig.trajectory) allocate_data() (in module slitflow.setreqs) atoi() (in module slitflow.fun.sort)

B

Basic (class in slitflow.fig.style)

BinaryImage (class in slitflow.loc.mask) Black (class in slitflow.img.create)

C

calc_delta_v() (in module slitflow.trj.msd) calc_msd() (in module slitflow.trj.msd) calc_subtrj() (in module slitflow.trj.subtrj) Centering (class in slitflow.tbl.math) centering_by_edge() (in module slitflow.tbl.math) change_column_item() (Info method) CheckerBoard (class in slitflow.img.create) clear_data() (Data method)

ColorBar (class in slitflow.fig.style) ColorLoop (class in slitflow.fun.palette) column (Info attribute) convert_indices() (Pipeline method) copy_req() (Info method) copy_req_columns() (Info method) copy_req_params() (Info method) CPU_RATE (Data attribute) CutOffPixelQuantile (class in slitflow.tbl.filter)

D

Data (class in slitflow.data) data (Data attribute) data_split_depth (Info attribute) delete_column() (Info method)

delete_param() (Info method) delete_private_param() (Info method) df (Pipeline attribute) DfromDeltaV (class in slitflow.trj.msd) DifferenceOfGaussian (class in slitflow.img.filter)

E

Each (class in slitflow.trj.msd) EvalOneCol (class in slitflow.tbl.math) EvalTwoCols (class in slitflow.tbl.math) EXT (Data attribute) (Figure attribute) (Image attribute) (Pickle attribute) (Table attribute)

F

Figure (class in slitflow.fig.figure) file_index() (Info method) file_nos (Info attribute) file_nos() (Info method) filter_and_merge_index_data() (in module slitflow.setreqs) fit_gauss_2d() (in module slitflow.loc.fit) fit_msd_anom() (in module slitflow.trj.msd) fit_msd_confs() (in module slitflow.trj.msd) fit_msd_simple() (in module slitflow.trj.msd) FitAnom (class in slitflow.trj.msd)

FitConfSaxton (class in slitflow.trj.msd) FitJumpLenDist2comp (class in slitflow.trj.wfastspt) FitJumpLenDist3comp (class in slitflow.trj.wfastspt) FitSimple (class in slitflow.trj.msd) from_data() (in module slitflow.setindex) from_hist_df() (in module slitflow.trj.wfastspt) from_req() (in module slitflow.setindex) from_req_plus_color() (in module slitflow.setindex) from_req_plus_data() (in module slitflow.setindex) ftest() (in module slitflow.tbl.stat) fullname() (in module slitflow.info)

G

Gauss (class in slitflow.img.filter) (class in slitflow.img.noise) Gauss2D (class in slitflow.img.plot) (class in slitflow.loc.fit) gauss2d() (in module slitflow.img.plot) (in module slitflow.loc.fit) gauss_noise() (in module slitflow.img.noise) get_class_name() (in module slitflow.name) get_column_depth() (Info method) get_column_dict() (Info method) get_column_name() (Info method) get_column_type() (Info method)

get_depth_id() (Info method) get_dict() (Info method) get_index_columns() (in module slitflow.setreqs) get_obs_names() (in module slitflow.name) get_param() (in module slitflow.load.tif) get_param_dict() (Info method) get_param_names() (Info method) get_param_value() (Info method) get_stack() (in module slitflow.fig.figure) Gray (class in slitflow.fig.image) (class in slitflow.img.montage) group_cols() (Info method) group_depth() (Info method)

I

Image (class in slitflow.img.image) Index (class in slitflow.tbl.create) index (Info attribute) Inference (class in slitflow.trj.wtramway) Info (class in slitflow.info) info (Data attribute)

inherit_split_depth() (in module slitflow.fig.figure) init_df() (Pipeline method) init_folder() (Pipeline method) insert_depth() (Info method) is_boxed() (in module slitflow.fig.style) is_log_scale() (in module slitflow.fig.style)

J

JumpLenDist (class in slitflow.trj.wfastspt)

K

keep_data() (Data method)

L

LineStyleLoop (class in slitflow.fun.palette) Link (class in slitflow.trj.wtrackpy) load() (Data method) (Info method) (Pipeline method) load_data() (Data method) (Image method) (Pickle method) (RGB method) (Table method) load_data_paths() (in module slitflow.name)

load_from_file() (Data method) load_from_keep() (Data method) load_index() (Info method) load_obs_names() (Pipeline method) load_split_depth (Info attribute) LocalMax (class in slitflow.img.filter) LocalMax2Xy (class in slitflow.loc.convert) LocalMax2XyWithDoG (class in slitflow.loc.convert) LocalMaxWithDoG (class in slitflow.img.filter) Locate (class in slitflow.trj.wtrackpy) Loop (class in slitflow.fun.palette)

M

make_data_paths() (in module slitflow.name) make_flowchart() (Pipeline method) make_group() (in module slitflow.name) make_index_cycle() (in module slitflow.setreqs) make_index_dest_cycle() (in module slitflow.setreqs) make_index_dest_setreq() (in module slitflow.setreqs) make_index_list() (in module slitflow.setreqs) make_info_path() (in module slitflow.name) make_load_index() (in module slitflow.setreqs) make_save_no_list() (in module slitflow.setreqs) make_splits_list() (in module slitflow.setreqs) MapPlot (class in slitflow.trj.wtramway) MarkerStyleLoop (class in slitflow.fun.palette) MaskArea (class in slitflow.img.calc) MaskFromParam (class in slitflow.tbl.proc) Mean (class in slitflow.tbl.stat) MEMORY_LIMIT (Data attribute) memory_limit (Data attribute) merge_different_index() (in module slitflow.tbl.table) merge_index_data() (in module slitflow.setreqs) merge_overlap_index() (in module slitflow.tbl.table) meta (Info attribute) ModelAnom (class in slitflow.trj.msd) ModelConfSaxton (class in slitflow.trj.msd) ModelJumpLenDist (class in slitflow.trj.wfastspt) ModelSimple (class in slitflow.trj.msd) module slitflow slitflow.data slitflow.fig slitflow.fig.bar slitflow.fig.figure slitflow.fig.image slitflow.fig.line slitflow.fig.scatter slitflow.fig.style slitflow.fig.trajectory slitflow.fun slitflow.fun.img slitflow.fun.misc slitflow.fun.palette slitflow.fun.sort slitflow.img slitflow.img.calc slitflow.img.convert slitflow.img.create slitflow.img.filter slitflow.img.image slitflow.img.montage slitflow.img.noise slitflow.img.plot slitflow.img.proc slitflow.info slitflow.load slitflow.load.table slitflow.load.tif slitflow.loc slitflow.loc.convert slitflow.loc.fit slitflow.loc.mask slitflow.loc.random slitflow.manager slitflow.name slitflow.setindex slitflow.setreqs slitflow.tbl slitflow.tbl.convert slitflow.tbl.create slitflow.tbl.filter slitflow.tbl.math slitflow.tbl.proc slitflow.tbl.stat slitflow.tbl.table slitflow.trj slitflow.trj.filter slitflow.trj.msd slitflow.trj.random slitflow.trj.subtrj slitflow.trj.wfastspt slitflow.trj.wtrackpy slitflow.trj.wtramway

msd_anom_diff() (in module slitflow.trj.msd) msd_confs_diff() (in module slitflow.trj.msd) msd_simple_diff() (in module slitflow.trj.msd)

N

n_worker (Data attribute) natural_keys() (in module slitflow.fun.sort)

natural_sort() (in module slitflow.fun.sort) norm_img_sd() (in module slitflow.fun.img) NumberLoop (class in slitflow.fun.palette)

O

Obs2Depth (class in slitflow.img.convert) (class in slitflow.tbl.convert)

Obs2DepthRGB (class in slitflow.img.convert) ordered_intersection() (in module slitflow.fun.sort) ordered_union() (in module slitflow.fun.sort)

P

palette (ColorLoop attribute) (LineStyleLoop attribute) (MarkerStyleLoop attribute) param (Info attribute) ParamTable (class in slitflow.fig.style) path (Info attribute) Pickle (class in slitflow.data) Pipeline (class in slitflow.manager) post_run() (Data method) (Gray method) (LocalMax2Xy method) (LocalMax2XyWithDoG method) (Locate method) (MapPlot method) (MaskArea method) (RGB method) (SelectParam method), [1] process() (AddColumn static method) (AddGauss static method) (All static method) (Basic static method) (BinaryImage static method) (Black static method) (Centering static method) (CheckerBoard static method) (ColorBar static method) (CutOffPixelQuantile static method) (Data static method) (DfromDeltaV static method) (DifferenceOfGaussian static method) (Each static method) (EvalOneCol static method) (EvalTwoCols static method) (FitAnom static method) (FitConfSaxton static method) (FitJumpLenDist2comp static method) (FitJumpLenDist3comp static method) (FitSimple static method) (Gauss static method), [1] (Gauss2D static method), [1] (Gray static method), [1] (Index static method) (Inference static method) (JumpLenDist static method) (Link static method) (LocalMax static method) (LocalMax2Xy static method) (LocalMax2XyWithDoG static method) (LocalMaxWithDoG static method) (Locate static method) (MapPlot static method) (MaskArea static method) (MaskFromParam static method) (Mean static method) (ModelAnom static method) (ModelConfSaxton static method) (ModelJumpLenDist static method) (ModelSimple static method) (Obs2Depth static method), [1] (Obs2DepthRGB static method) (ParamTable static method) (RandomRGB static method) (RefineCoM static method) (RGB static method) (SelectParam static method), [1] (Simple static method), [1], [2] (SingleCsv static method) (SingleFile static method) (SortCols static method) (SplitFile static method) (StepAtLeast static method) (StepRange static method) (Subtrajectory static method) (Tessellation static method) (Test static method) (ToTiff static method) (UniformRect static method) (Value static method) (Walk2DCenter static method) (WalkCircle static method) (WalkRect static method) (WithModel static method), [1]

R

RandomRGB (class in slitflow.img.create) reduce_list() (in module slitflow.fun.misc) RefineCoM (class in slitflow.trj.wtrackpy) reflect_in_rect() (in module slitflow.trj.random) rename_class_name() (Info method) rename_info_class() (Pipeline method) reqs (Data attribute) reset_depth() (Info method) RGB (class in slitflow.img.image) (class in slitflow.img.montage) rgb2cmap() (in module slitflow.fig.style)

root_dir (Pipeline attribute) run() (Data method) (Pipeline method) run_copy() (Pipeline method) run_cycle() (in module slitflow.setreqs) run_delete() (Pipeline method) run_index() (Pipeline method) run_mp() (Data method) run_multi_data() (Pipeline method) run_Obs2Depth() (Pipeline method) run_one_data() (Pipeline method) run_one_data_multi_obs() (Pipeline method)

S

save() (Data method) (Info method) (Pipeline method) save_data() (Basic method) (Data method) (Figure method) (Image method) (Pickle method) (RGB method) (Table method) save_index() (Info method) select_param() (in module slitflow.setindex) SelectParam (class in slitflow.img.proc) (class in slitflow.tbl.proc) set_address() (Pipeline method) set_ana_name() (Pipeline method) set_barwidth() (in module slitflow.fig.style) set_class_name() (Pipeline method) set_clim() (in module slitflow.fig.style) set_cmap() (in module slitflow.fig.style) set_color_index() (in module slitflow.img.image) (in module slitflow.setindex) set_errorcapsize() (in module slitflow.fig.style) set_errorcolor() (in module slitflow.fig.style) set_errorlinestyle() (in module slitflow.fig.style) set_errorthickness() (in module slitflow.fig.style) set_file_nos() (Info method) set_format() (in module slitflow.fig.style) set_group_depth() (Info method) set_grp_name() (Pipeline method) set_img_size() (in module slitflow.img.image) set_index() (Data method) (Locate method) (MaskArea method) (Obs2Depth method) (Obs2DepthRGB method) (RGB method), [1] (SelectParam method), [1] (SingleFile method) (SplitFile method) (Table method) set_index_file_no() (Info method) set_info() (AddColumn method) (AddGauss method) (All method) (Basic method) (BinaryImage method) (Black method) (Centering method) (CheckerBoard method) (ColorBar method) (CutOffPixelQuantile method) (Data method) (DfromDeltaV method) (DifferenceOfGaussian method) (Each method) (EvalOneCol method) (EvalTwoCols method) (FitAnom method) (FitConfSaxton method) (FitJumpLenDist2comp method) (FitJumpLenDist3comp method) (FitSimple method) (Gauss method), [1] (Gauss2D method), [1] (Gray method), [1] (Image method) (Index method) (Inference method) (JumpLenDist method) (Link method) (LocalMax method) (LocalMax2Xy method) (LocalMax2XyWithDoG method) (LocalMaxWithDoG method) (Locate method) (MapPlot method) (MaskArea method) (MaskFromParam method) (Mean method) (ModelAnom method) (ModelConfSaxton method) (ModelJumpLenDist method) (ModelSimple method) (Obs2Depth method), [1] (Obs2DepthRGB method) (RandomRGB method) (RefineCoM method) (RGB method) (SelectParam method), [1] (Simple method), [1], [2] (SingleCsv method) (SingleFile method) (SortCols method) (SplitFile method) (StepAtLeast method) (StepRange method) (StyleAll method) (Subtrajectory method) (Tessellation method) (Test method) (ToTiff method) (UniformRect method) (Value method) (Walk2DCenter method) (WalkCircle method) (WalkRect method) (WithModel method), [1] set_items() (ColorLoop method) (LineStyleLoop method) (Loop method) (MarkerStyleLoop method) (NumberLoop method) set_label() (in module slitflow.fig.style) set_legend() (in module slitflow.fig.style) set_lim() (in module slitflow.fig.style) set_linecolor() (in module slitflow.fig.style) set_linestyle() (in module slitflow.fig.style) set_linewidth() (in module slitflow.fig.style) set_lut() (in module slitflow.fun.img) set_markercolor() (in module slitflow.fig.style) set_markersize() (in module slitflow.fig.style) set_markerstyle() (in module slitflow.fig.style) set_markerwidth() (in module slitflow.fig.style) set_meta() (Info method) set_obs_names() (Pipeline method) set_param() (Pipeline method) set_path() (Info method) set_reqs() (BinaryImage method) (Data method) (EvalTwoCols method) (ParamTable method) (SplitFile method) (Value method) set_reqs_address() (Pipeline method) set_reqs_split() (Pipeline method) set_run_mode() (Pipeline method)

set_size() (in module slitflow.fig.style) set_split() (Data method) set_split_depth() (Info method) set_tick() (in module slitflow.fig.style) set_tickformat() (in module slitflow.fig.style) set_ticklabel() (in module slitflow.fig.style) set_title() (in module slitflow.fig.style) Simple (class in slitflow.fig.bar) (class in slitflow.fig.line) (class in slitflow.fig.scatter) SingleCsv (class in slitflow.load.table) SingleFile (class in slitflow.load.tif) slitflow module slitflow.data module slitflow.fig module slitflow.fig.bar module slitflow.fig.figure module slitflow.fig.image module slitflow.fig.line module slitflow.fig.scatter module slitflow.fig.style module slitflow.fig.trajectory module slitflow.fun module slitflow.fun.img module slitflow.fun.misc module slitflow.fun.palette module slitflow.fun.sort module slitflow.img module slitflow.img.calc module slitflow.img.convert module slitflow.img.create module slitflow.img.filter module slitflow.img.image module slitflow.img.montage module slitflow.img.noise module slitflow.img.plot module slitflow.img.proc module slitflow.info module slitflow.load module slitflow.load.table module slitflow.load.tif module slitflow.loc module slitflow.loc.convert module slitflow.loc.fit module slitflow.loc.mask module slitflow.loc.random module slitflow.manager module slitflow.name module slitflow.setindex module slitflow.setreqs module slitflow.tbl module slitflow.tbl.convert module slitflow.tbl.create module slitflow.tbl.filter module slitflow.tbl.math module slitflow.tbl.proc module slitflow.tbl.stat module slitflow.tbl.table module slitflow.trj module slitflow.trj.filter module slitflow.trj.msd module slitflow.trj.random module slitflow.trj.subtrj module slitflow.trj.wfastspt module slitflow.trj.wtrackpy module slitflow.trj.wtramway module sort_column() (Info method) sort_index() (Info method) SortCols (class in slitflow.tbl.convert) split() (Data method) (Info method) split_data() (Data method) (Image method) (Pickle method) (Table method) split_depth() (Info method) split_info_path() (in module slitflow.name) SplitFile (class in slitflow.load.tif) StepAtLeast (class in slitflow.trj.filter) StepRange (class in slitflow.trj.filter) style_dict (LineStyleLoop attribute) StyleAll (class in slitflow.fig.trajectory) Subtrajectory (class in slitflow.trj.subtrj)

T

Table (class in slitflow.tbl.table) Tessellation (class in slitflow.trj.wtramway) Test (class in slitflow.tbl.stat) to_fastspt_cell() (in module slitflow.trj.wfastspt) to_hist_df() (in module slitflow.trj.wfastspt)

to_imshow() (Image method) (RGB method) to_json() (Info method) to_model_hist_df() (in module slitflow.trj.wfastspt) ToTiff (class in slitflow.fig.figure)

U

UniformRect (class in slitflow.loc.random)

V

validate_index_columns() (in module slitflow.setreqs)

validate_splits() (in module slitflow.setreqs) Value (class in slitflow.loc.mask)

W

Walk2DCenter (class in slitflow.trj.random) WalkCircle (class in slitflow.trj.random)

WalkRect (class in slitflow.trj.random) WithModel (class in slitflow.fig.bar) (class in slitflow.fig.line)